Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs1889575 | chr6:46934454 | A/T | 1.51E-5 | 407 | 15.03 | 16.73 | 12.5 | KM Plot |
| LGG | rs1889576 | chr6:46934159 | A/G | 1.51E-5 | 407 | 15.03 | 16.73 | 12.5 | KM Plot |
| LGG | rs1894043 | chr1:159069211 | T/C | 0.000183 | 398 | 10.72 | 15.2 | 15.63 | KM Plot |
| LGG | rs189662 | chr20:12989663 | A/G | 5.8E-5 | 407 | 17.07 | 15.55 | 15.18 | KM Plot |
| LGG | rs189904433 | chr5:156033055 | C/T | 2.6E-5 | 407 | 16.67 | 14.43 | 11.17 | KM Plot |
| LGG | rs190154414 | chr12:69622395 | T/C | 6.98E-5 | 392 | 15.15 | 14.73 | 18.27 | KM Plot |
| LGG | rs191799288 | chr12:69622348 | G/A | 5.28E-5 | 392 | 15.13 | 14.63 | 17.77 | KM Plot |
| LGG | rs1925484 | chr9:25092081 | A/G | 1.56E-9 | 407 | 14.35 | 14.37 | 15.47 | KM Plot |
| LGG | rs1932031 | chr6:46928159 | A/G | 1.91E-5 | 402 | 15.03 | 16.1 | 12.5 | KM Plot |
| LGG | rs1932032 | chr6:46928100 | T/C | 1.65E-5 | 404 | 15.13 | 16.37 | 12.5 | KM Plot |
| LGG | rs1936890 | chr10:129497223 | G/T | 0.000101 | 407 | 15.95 | 10.43 | 0 | KM Plot |
| LGG | rs194144 | chr5:155964872 | T/C | 5.21E-6 | 406 | 15.57 | 15.17 | 15.37 | KM Plot |
| LGG | rs194145 | chr5:155958060 | G/A | 5.13E-6 | 403 | 15.6 | 15.23 | 15.37 | KM Plot |
| LGG | rs1948681 | chr9:22543800 | A/G | 4.91E-9 | 407 | 17.07 | 10.73 | 15.63 | KM Plot |
| LGG | rs1967966 | chr6:36072172 | C/T | 1.89E-10 | 403 | 15.63 | 16.47 | 6.15 | KM Plot |